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Oat Flour Pumpkin Muffins (Gluten-Free)

November 20, 2019 by Christy Gurin (updated August 22, 2025) | 3 Comments

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My oat flour pumpkin muffins recipe is easy to make without refined sugar, and it’s gluten-free too. The muffins are fluffy and moist, with a rich spiced pumpkin flavor.

close up of soft pumpkin muffin with bite taken out of it.

Pumpkin muffins are always a welcome baking project, but an absolute must in Fall. If your hang up is all the refined sugar, flour, butter and other not-so-healthy stuff, I feel you. While there’s a time and a place for all of that (in my opinion), on the day to day, it’s important to feed our bodies well.

If you feel the same, try my recipe for gluten-free pumpkin muffins! You won’t miss all of the less than wholesome stuff you find in most muffin recipes one bit, and all of your wildest pumpkin-filled dreams will be fulfilled.

Why my oat flour pumpkin muffin recipe is so special

Although it’s gluten free, this recipe doesn’t use hard to find gluten free flours (what even is cassava flour?!). This pumpkin muffin recipe just uses good ol’ ground up oats for flour, which most people have on hand already.

No dry muffins here! They’re soft, fluffy, and perfectly moist, with just the right amount of sweetness and spice.

  • They’re made without any refined sugar too, just maple syrup.
  • They’re portable, for a quick breakfast on-the-go
  • The freeze and reheat well.
  • My toddler will eat them. Mike drop. (seriously, she’s picky as all hell these days so this is a win) – I bet your kids will too!
Overhead picture of gluten free muffins in a baking tin. One sits on a small plate next to a mug with black tea.

Grinding the oats takes one extra step, but you can throw the rest of the dry ingredients in with them so you aren’t making another bowl dirty. While your blender is already in use, make oat flour for later use since we have tons of oat flour recipes on this website. Oat flour pancakes and pumpkin protein balls are two tasty ways to use that oat flour up!

How to make the gluten free pumpkin muffins

This recipe is pretty easy to make. Here are the basic steps:

  1. Assemble your ingredients.
Bowls and measuring cups on a counter that are full of oats, pumpkin puree, maple syrup, and ground spices.
  1. put all of the dry ingredients in the blender and blend until the oats turn to flour. It should just take 20-30 seconds in a high power blender (Vitamix, Blendtec) and a little longer in a regular blender. Be careful not to over blend or the heat can make the oats clump up.
Looking into a blender containing oats, cocoa powder, and a white powder on a gray surface with a blue textured cloth around the base.
  1. Combine the wet ingredients together in a bowl. I use a hand mixer, but you can use a wire whisk if you don’t have a mixer. Just make sure to mix it well.
Side-by-side images of a mixing bowl. Left: ingredients including eggs and liquid. Right: mixed batter with a spatula. Background includes a blue cloth.
  1. Stir the dry and wet ingredients together to create the pumpkin muffin batter. Don’t over mix or your muffins will be dry.
  2. Pour the batter into a lined or greased muffin tin.
  3. Bake, cool, then shove a muffin in your face as fast as humanly possible. Do not skip the last step. It is imperative.
Side-by-side images of a muffin tray: the left shows raw batter in 12 cups, the right shows 12 baked muffins. Both trays rest on a textured blue cloth.

They’re easy to make and would be a great recipe to make with your kiddos. Probably not easy enough for a 2 year old, but a 4 year old could definitely help with this one!

Substitutions and variations

As with most baked goods, you can do swaps of the ingredients. Of course, any major swaps may alter the results, but they should still turn out pretty tasty. Here are a few I’ve tested:

  • For gluten free muffins, make sure to use gluten free oats! This might seem like a no brainer, but I’d hate for you to give your celiac friend an allergic reaction so I want to be as clear as day on that one. Oats are naturally gluten free but pick up gluten in processing facilities.
  • To make the muffins vegan, make flax eggs instead of real ones. To do this, whisk 2 tbsp flax meal with 1/3 cup water in a small bowl. -Refrigerate at least 20 minutes, or cover and refrigerate overnight before using in the recipe.
  • If you don’t have almond milk, use whatever milk you’ve got. I’ve used regular cow’s milk and vanilla almond milk before. If you use vanilla almond milk, just use half the amount of vanilla extract. I’m sure you can use other milk types but haven’t tested each one myself.
  • If you have pumpkin pie spice and don’t feel like measuring each individually, use 1 3/4 tsp. pumpkin pie spice instead of adding the cinnamon, nutmeg, ginger, cloves and cardamom.
Spices, baking soda, and salt in a bowl. Two eggs and a measuring cup are nearby.

If you try any other substitutions that work out (or don’t), let me know by leaving a comment!

Freezing and reheating oat flour pumpkin muffins

While they keep in the refrigerator for up to 5 days and about 3 days on the counter, sometimes you need more longevity out of a muffin. As a working mom, I appreciate having a plethora of healthy freezer snacks I can bust out for a quick weekday breakfast or to throw in a lunchbox.

To freeze these pumpkin muffins, make sure they are cooled completely. Place them in a freezer bag. I just got these reusable gallon sized bags and am really liking them so far. Seal the bag and freeze for up to 3 months. They might last longer but without wrapping each individually, they’ll probably get freezer burnt by then. Save the plastic and just eat them quickly.

To reheat, you can definitely just let the muffin thaw overnight or in your little one’s lunchbox, but I like to microwave mine and eat it warm. In my microwave, it takes about 45 seconds but the power level on different microwaves vary.

Test yours and it will probably take anywhere from 30 – 60 seconds. If you over microwave, the muffin will be dry and the texture won’t be as great. You’re been warned.

Hand holding a muffin with bite taken out of it.

Other oat flour recipes

I bake with oat flour a lot. By a lot, I mean, its really my go-to flour of choice and I have half a dozen oat flour muffin recipes on this site. Here are some of my favorites and a few from around the internet:

  • Peanut butter banana oat flour muffins are by far my most popular muffin recipe
  • These chocolate peanut butter cupcakes with coconut cream peanut butter frosting are divine
  • These oat flour carrot muffins are another great way to get your veggies in muffin form
  • Oat flour waffles that are filling and full of protein but still taste great
  • Delicious oat flour chocolate chip cookies that may be your new favorite treat
  • These buttery oat flour biscuits to serve with your favorite meal
Seen from overhead: Plate stacked with pumpkin muffins next to two mugs of hot tea and a teapot.

Other pumpkin recipes

If it’s pumpkin you’re after, I’ve got a few goodies for you:

  • This pumpkin bread with orange glaze is ever so tasty and the zip from the orange adds a unique twist that you’ll love.
  • Pumpkin scones that are already moist and full of flavor and then get topped with a delicious maple glaze.
  • Pumpkin protein energy balls that are festive and fun but will fuel you up too.

Aaaand, one more picture of the ingredients, just because I think they really shine from this angle. Let me know what you think of these healthy pumpkin muffins!

Homemade pumpkin muffin with a bite taken out of it on a plate next to a cup of tea.
Recipe
A hand holding a partially eaten muffin against a plain background.
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Oat Flour Pumpkin Muffins (Gluten-Free)

Created by: Christy Gurin
Prep Time 15 minutes mins
Cook Time 20 minutes mins
Cooling Time 10 minutes mins
Total Time 45 minutes mins
Print Recipe
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Prep Time 15 minutes mins
Cook Time 20 minutes mins
Total Time 45 minutes mins
12
My easy oat flour pumpkin muffins recipe is gluten-free and has no refined sugar. The muffins are fluffy and moist with rich pumpkin flavor.
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Ingredients
 

  • 3 cups old-fashioned oats (to make gluten free, make sure to oats are labeled "gluten free")
  • 2 tsp. ground cinnamon
  • 1/4 tsp. ground nutmeg
  • 1/8 tsp. ground cloves
  • 1/8 tsp. cardamom
  • 1/8 tsp. ground ginger
  • 1 1/2 tsp. baking soda
  • 3/4 tsp. salt
  • 1/4 cup melted coconut oil
  • 1/2 cup plain unsweetened almond milk room temperature ideally
  • 2 eggs room temperature ideally
  • 3/4 cup pure maple syrup
  • 1 cup pumpkin pureé canned
  • 2 tsp. vanilla extract

Instructions

  • Preheat oven to 350° F (190° C).
  • Grease a muffin tin or place 12 muffin liners into a muffin tin and set aside.
  • Place oats spices, baking soda, and salt into a blender and blend until oats are broken down into oat flour (don't over grind or oat flour may get clumpy).
  • In a mixing bowl, add melted coconut oil, almond milk, eggs, maple syrup, pumpkin puree, and vanilla. Use a wire whisk to stir or lightly blend with a hand mixer.
  • Pour dry ingredients from blender into mixing bowl and stir until just mixed in and most clumps are dissolved.
  • Pour batter into a prepared muffin tin. Bake for about 20 minutes until muffins are baked through and a toothpick inserted into the center comes out without any wet batter on it.
  • Remove muffins from oven and allow to cool in the muffin tin for 10 minutes. Remove from muffin tin and either serve warm or cool completely on a wire rack to store.

Notes

STORING: Remove muffins from oven and allow to cool in the muffin tin for 10 minutes. Remove from muffin tin and either serve warm or cool completely on a wire rack to store. If storing for later, allow to cool fully before placing muffins in an airtight container for up to three days on the counter or 5 days in the refrigerator.
FREEZING: Muffins can be frozen in an airtight container for up to 3 months and reheated in the microwave for 30 – 60 seconds.
GLUTEN FREE: To make recipe gluten free, use gluten free oats.
VEGAN: To make recipe vegan, make two flax eggs by whisking 2 tbsp flaxmeal with 1/3 cup water in a small bowl. -Refrigerate at least 20 minutes, or cover and refrigerate overnight before using flax eggs.
SUBSTITUTIONS: Can substitute cow’s milk, vanilla almond milk, or whatever your preference is. If using vanilla milk, reduce the vanilla extract to 1 tsp. 1 3/4 tsp. pumpkin pie spice can be substituted in place of using cinnamon, nutmeg, ginger, cloves and cardamom individually.
PUMPKIN BREAD: To make bread, use a greased bread tin and bake for 50-60 minutes.
 

Nutrition

Calories: 195kcal | Carbohydrates: 30g | Protein: 4g | Fat: 7g | Saturated Fat: 4g | Cholesterol: 27mg | Sodium: 316mg | Potassium: 174mg | Fiber: 3g | Sugar: 13g | Vitamin A: 3217IU | Vitamin C: 1mg | Calcium: 63mg | Iron: 1mg

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posted in: Baked Goods, Dairy-Free, Gluten-Free, Grains, Oven, Snacks, Vegetarian

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    If you love this recipe, please consider giving it a star rating when you post a comment. Star ratings help people discover my recipes online. I read every review and your support means a lot to me!

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    Comments & Reviews

  1. Christy says

    December 13, 2022

    That’s music to my ears! I love knowing that people are enjoying my recipes. 🙂

    Reply
  2. Allison Oberle says

    October 19, 2020

    I love your peanut butter and almond butter oat flour muffin recipes and would love to try this one too but I have a question for you. I buy oat flour and keep it on hand rather than buy oatmeal or old fashioned oats so could you please let me how much oat flour equals 3 cups of old fashioned oats? Thank you!

    Reply
    • Christy says

      January 13, 2021

      That definitely saves a step. A cup of rolled old fashioned oats grinds into 1 cup + 2-3 tablespoons of oat flour so for this recipe you’d need about 3 1/2 cups of oat flour.

      Reply

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Hi, I'm Christy

I started cooking, baking, and helping in the kitchen when I was old enough to reach the counter. I am a food lover with a focus on quick and easy dinners using wholesome ingredients that are approachable for the home chef. If you crave flavor but always find yourself short on time, you’re in the right place.

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